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这是一个汇集多器官分割任务的仓库。
This is the official repository of "AbdomenCT-1K: Is Abdominal Organ Segmentation A Solved Problem?".
In this work,
The whole dataset can be downloaded here by filling in a simple data usage tracking form. The benchmark datasets are available on the Dataset
page in the following grand-challenge homepages.
Please register the challenges with your real names, affiliations, and affiliation E-mails.
we annotate 50 cases with 12 organs, including liver, kidney, spleen, pancreas, esophagus, gallbladder, stomach, aorta, celiac trunk, inferior vena cava, right adrenal gland, and left adrenal gland.
Update: we add labels of 110 cases. Now, it contains 773 cases with pseudo tumor labels. The corresponding images are in the whole dataset
Case_00001-00773
.
It is challenging to make a definite and accurate diagnosis with only single phase CT scans because identifying the (malignant) tumor usually requires pathological examinations. As an alternative, we provide pseudo tumor labels of 663 cases by annotating all the possible tumors, which can be used for noisy label learning.
[1] N. Heller, F. Isensee, K. H. Maier-Hein, X. Hou, C. Xie, F. Li, Y. Nan, G. Mu, Z. Lin, M. Han et al., “The state of the art in kidney and kidney tumor segmentation in contrast-enhanced ct imaging: Results of the kits19 challenge,” Medical Image Analysis, vol. 67, p. 101821, 2021.
[2] A. L. Simpson, M. Antonelli, S. Bakas, M. Bilello, K. Farahani, B. Van Ginneken, A. Kopp-Schneider, B. A. Landman, G. Litjens, B. Menze et al., “A large annotated medical image dataset for the development and evaluation of segmentation algorithms,” arXiv preprint arXiv:1902.09063, 2019.
[3] K. Clark, B. Vendt, K. Smith, J. Freymann, J. Kirby, P. Koppel, S. Moore, S. Phillips, D. Maffitt, M. Pringle et al., “The cancer imaging archive (tcia): maintaining and operating a public information repository,” Journal of Digital Imaging, vol. 26, no. 6, pp. 1045–1057, 2013.
[4] P. Bilic, P. F. Christ, E. Vorontsov, G. Chlebus, H. Chen, Q. Dou, C.-W. Fu, X. Han, P.-A. Heng, J. Hesser et al., "The liver tumor segmentation benchmark (lits)," arXiv preprint arXiv:1901.04056, 2019.
[5] H. R. Roth, A. Farag, E. B. Turkbey, L. Lu, J. Liu, and R. M. Summers, “Data from pancreas-CT,” The Cancer Imaging Archive, 2016.
[6] H. R. Roth, L. Lu, A. Farag, H.-C. Shin, J. Liu, E. B. Turkbey, and R. M. Summers, “Deeporgan: Multi-level deep convolutional networks for automated pancreas segmentation,” in International Conference on Medical Image Computing and Computer-assisted Intervention, 2015, pp. 556–564.
We highly appreciate the organizers and contributors of NIH Pancreas dataset, Liver and Liver Tumor Segmentation challenge, Medical Segmentation Decathlon, and Kidney Tumor Segmentation challenge (KiTS19) for providing the publicly available abdominal CT datasets. We are grateful to the editors and the reviewers for their time and efforts spent on our paper. Their comments are very valuable for us to improve this work. We also thank the High Performance Computing Center of Nanjing University for supporting the blade cluster system to run the experiments. We also thank Mengzhang Li and Xiao Ma for helping us run some experiments.
@article{Ma-2021-AbdomenCT-1K,
title={AbdomenCT-1K: Is Abdominal Organ Segmentation A Solved Problem?},
author={Ma, Jun and Zhang, Yao and Gu, Song and Zhu, Cheng and Ge, Cheng and Zhang, Yichi and An, Xingle and Wang, Congcong and Wang, Qiyuan and Liu, Xin and Cao, Shucheng and Zhang, Qi and Liu, Shangqing and Wang, Yunpeng and Li, Yuhui and He, Jian and Yang, Xiaoping},
journal={IEEE Transactions on Pattern Analysis and Machine Intelligence},
year={2021},
doi={10.1109/TPAMI.2021.3100536}
}
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